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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015836545.1_cds_XP_016506354.1_19587
CDS Infomation

[gene=LOC107824130] [db_xref=GeneID:107824130] [protein=polygalacturonase-2-like] [protein_id=XP_016506354.1] [location=join(30616..30954,32085..32216,32984..33151,33311..33331,34027..34234,35041..35122,35489..35597,35836..35952,36523..36750)] [gbkey=CDS]
Sequence

ATGGCCCATCTAAGGAATCTCTTCATATTATTCACTATTTTTATGATTATTATATCACTT
TCATCTTGCAGCAGCAACATTAAATTCTATGATGAAGATACATTAAGAGAAGCTCAAGAT
CATAACATGAATCTTGAAAGGGAATTTGGTTATGATTTTCAAGCTTATCCTTCTAATTAT
TTCAACACCATTGATCTTGAAGATAACAACAATTATTATGATCAAATTAGTAGATTTAAT
AGATTCAAGAATTTGGAGAAAGATGAAGCAGTTGGGGTTACAACAATAAATGTGGAGAGT
TTTGGAGCTAAAGGTGATGGAAATACAGATGATACATATGCATTTCAAAAAGCATGGAAA
GCAGTTTGTTTGTCTTCAACTGCAGTGAACTTTATGGTACCCCAAAACAAGAAATATCTT
CTCAAACAAATCAAATTTTCTGGGCCATGCAAATCTTTCATCACAATGCAGATTTCTGGA
ACTTTATTAGCATCTGATAAGACTTCAGATTACAACAAAGATAGCAGACATTGGCTTCAA
TTTGATAGTGTTCAAAACTTGGTTGTTGAAGGAGAAGGAGTTATCAATGGCAATGGGAAA
ATTTGGTGGCAAAATTCTTGCAAGATTAATAAAAAATTGCCGTGCAAGCATGCACCCACG
GCCCTAACATTCTACAACTGCAACAATTTGAAATTGAGGGACCTTAAAATAGAAGATGCA
CAACAAATGCATGTCTCATTTGAGAGATGCTCTAGAGTTGAAGTTACAAAACTGTTTGTG
AGTGCTCCAGAAAATAGCCCTAACACTGATGGCATTCATATAACAAACACCCAATACATC
ACAATTTCTGGTTGTACCATTGGCACAGGTGATGATTGCATCTCAATTGAGAGTGGATCC
AGAAATGTTCAAGCCAAAGACATTACTTGTGGACCAGGTCATGGAATAAGTATTGGAAGT
TTGGGAGATGGAAATTCAGAAGCTCATGTGTCTAATATTTTAGTGAATGGAACTAAGCTC
ACTGGAACCTCAAATGGACTTAGGATCAAGACTTGGCAGGGAGGATCCGGAAGTGCAAGC
AATATAAAGTTTGAAAATGTGGTGATGAATGGTGTCAAAAACCCCATTATTATAGACCAA
AACTATTGTGATCAAGATTCTCCATGCAAAGAACAGGATTCAGCAGTTCAAGTAAAAAAT
GTGATTTATCAAAACATCAAAGGCACAAGCGCGACGAATGAAGCTATAAATTTTGACTGC
AGCAAAAATTTTCCATGTCAAAGAATTATGTTGCAGAATATAAACTTGGTTGGGGAAGAT
GATGAAACTTCAAAAGCTGTTTGCAACCATGTCAATTTTGTCAATATTTCAGCTGTCTCT
CCAAAATGTCCTCAAATGAATTAA

Peptide Sequence

PEP ID

XP_016506354.1
PEP Infomation

PREDICTED: polygalacturonase-2-like [Nicotiana tabacum]
Sequence

MAHLRNLFILFTIFMIIISLSSCSSNIKFYDEDTLREAQDHNMNLEREFGYDFQAYPSNY
FNTIDLEDNNNYYDQISRFNRFKNLEKDEAVGVTTINVESFGAKGDGNTDDTYAFQKAWK
AVCLSSTAVNFMVPQNKKYLLKQIKFSGPCKSFITMQISGTLLASDKTSDYNKDSRHWLQ
FDSVQNLVVEGEGVINGNGKIWWQNSCKINKKLPCKHAPTALTFYNCNNLKLRDLKIEDA
QQMHVSFERCSRVEVTKLFVSAPENSPNTDGIHITNTQYITISGCTIGTGDDCISIESGS
RNVQAKDITCGPGHGISIGSLGDGNSEAHVSNILVNGTKLTGTSNGLRIKTWQGGSGSAS
NIKFENVVMNGVKNPIIIDQNYCDQDSPCKEQDSAVQVKNVIYQNIKGTSATNEAINFDC
SKNFPCQRIMLQNINLVGEDDETSKAVCNHVNFVNISAVSPKCPQMN

Transcript Sequence

Gene sequence data has not been registered.